Ok :) Thinking about the related thread you've posted regarding the space consumed by assembly references, I have a feeling that having the static reference copying turned off will probably make a very big difference in your initial build time.
The upcoming v2.8 release does have a number of improvements targeting engine startup times... although the effectiveness of these improvements will be very dependent upon where the bottlenecks are in the first startup run. I have a feeling that in your case the slow initialisation results more from the workspace creation and initial build, rather than the NCrunch kicking itself to life.
There is some mention in the documentation of the
workspaces being cleaned up on exit, although this isn't clearly explained and I'm sure it's easily missed or not understood.