I'm having two issues, which may be related, so I'll report them together:
Issue 1: Tests fail in background mode, pass in debug/TestDriven.net.
Issue 2: When stepping through a failed test and it passes, icons are left in funny state.
The original issue I'm investigating is that NCrunch is reporting a unit tests as failing, but if I run the test via TestDriven.Net, or if I use NCrunch to debug into the test, it passes.  If I "Run/Prioritize covering tests", it fails. The test is pretty straightforward, looking something like this:
	        [Test]
	        public void AllSettingsOff()
	        {
	            var args = new[] { "" };
	            var mySettingsObject = new MySettings(args, Keys.Shift);
	            Assert.IsFalse(mySettingsObject.BoolProperty1);
	            Assert.IsFalse(mySettingsObject.BoolProperty2);
	            Assert.IsFalse(mySettingsObject.BoolProperty3);
	            Assert.IsFalse(mySettingsObject.BoolProperty4);
	            Assert.IsFalse(mySettingsObject.BoolProperty5);  //This is the one failing	
	            Assert.AreEqual(mySettingsObject.ReferenceProperty, null);
	            Assert.AreEqual(mySettingsObject.StringProperty, null);
	        }
Test was showing as failing (red dots up until a failing assert call, where a red X was shown, followed by black dots for each subsequent line.

I used the "Break into first covering test at this line" option to debug to the line right before the exception.  At that point, I stepped through each line (using F10) until the test completed. That time through, it passed.  However, the NCrunch dots updated into a funny state. The red dots turned green, the red X turned into a *green X* and the block dots stayed black (instead of turning green).

I'm running NCrunch v1.37.0.46b, Visual Studio 2010 SP1, and using Mbunit v3.3.
I do have a few assemblies in the solution where "Copy Referenced Assemblies to Workspace" is turned on, but not for the assembly containing this test or for the class being tested.