Hi,
NCrunch.exe carries with it integration with all supported versions of VS. By default, it will use the highest available version of VS installed on the machine. You can force it to use a specific version of VS/MSBuild using the /VS command line parameter, for example:
NCrunch.exe mysolution.sln /VS 2015
Note that if the tool is connecting to grid nodes that don't have the same version of VS installed, the grid node will fall back to the closest available version.
Under v2.26, the disabling of grid nodes is actually stored in the .v2.ncrunchsolution.user file in binary form. This has been changed in v3, where it is now stored in .v3.ncrunchsolution.user in text form instead.