Thanks Remco,
Unfortunately this setup is common. We currently have 71 projects in our solution, about 15 of them are silverlight builds of another .NET project. The silverlight projects do not have any tests, and are not considered by NCrunch, so I would have thought that as far as NCrunch is concerned there should be only 1 project which is being tested, the .NET one.
Anyway thanks for letting me know your thoughts on the issue. I'll still aim to get you a small test solution which demonstrates the issue, when I get a spare 5 mins, to see if there is the chance of a solution.
And thanks for an excellent, revolutionary tool. Its awesome!
Sam